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Hello,
I am new to protein design so this is a noob question , I'll close the issue asap.
I want to predict the complex of a designed monomer (protein 1) and another (protein2) which is an antige…
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**Uberon term**
strand of hair UBERON:0001037 A filament, mostly protein, that grows from follicles found in the dermis[WP].
hair shaft UBERON:0002074 The main part of the hair which is composed of …
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dear all,
I've found the site to compare the protein sequences :
https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi.
it's about comparing every protein sequence to the PSSM Database with RPS…
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I am trying to get some predictions of protein-protein complexes.
As "positive" control, I use prediction for a complex for which the cryoEM structure was solved and published in second half of 2022.…
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Dear all,
I downloaded the structures from the release [v2023_02 with TM and pLDDT > 70 (71 .tar.gz files)](https://github.com/facebookresearch/esm/blob/main/scripts/atlas/v2023_02/full/tarballs.t…
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The GSC ignores hetroatoms. I'm somewhat concerned that these have been ignored given the examples have important groups in hetroatom components - for example, in the first example, all the iron conte…
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Hi team,
I am trying to refine a Modeller-generated structure of a membrane dimeric protein with bound ligand. Is it going to be possible with PREFMD2?
Just want to ask since I see some hashed …
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I used spaln to annotated a gene structure in de-nove assembly using a homologous protein, but spaln report error (Segmentation fault (core dumped)). The command as follow
spaln -Q3 -O0 -KP -C1 -M100…
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I performed covalent docking using meeko and autodock, When I received the results the dlg file seems to be missing some atoms. I’m not able to create a file for md simulation because it shows incorre…
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Hello,
I was wondering if I can use AutoDock-Vina for docking between proteins and peptides.If not, do you have other suggestions?
Best Regards
Soodabeh