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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/crukci-bioinformatics/qPLEXanalyzer
Confirm the f…
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Hello:
Two recent papers from Dictyostelium suggest the need for a new GO process term for polyphosphate signaling.
Name: polyphosphate-mediated signaling
Ontology: biological_process
Synony…
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After reviewing different tools in ToolShed and discussing with Valentin M., I propose 2 ways of version control:
1. ToolShed controls repository by revision, so for example our PA tool:
* PA revisi…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/eralpdogu/MSstatsQCgui
Confirm the following by e…
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*Breckels et al. have written a very nice piece on analysing appropriate proteomics data for subcellular localisation. I particularly like the "workshop characteristics" of the text. Which allows a no…
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Some notes from our convo on Friday, Mandy, as well as a few other things I just thought of.
1. What is the mRNA input for? Colorization, or penalizing lowly expressed nodes? If the former, we run…
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Hi,
I have been playing around with the `chromatogram `function for a bit, and noticed a few things that I did not quite understand:
1. it seems like the "old" `rawEIC `function (xcms) is a lot …
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1. Data Input
- [ ] Wrapper to format prize/interactome files
2. Parameter sweep
- [x] Grid search
* Input: parameter file with param grid and I/O paths (/nfs/latdata/iamjli/packag…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/eralpdogu/MSstatsQC
Confirm the following by edit…
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As of a few minutes ago there are broken links to the following ontologies:
aero, cheminf, chmo, cmf, cvdo, ido, mirano, ncithesaurus, ogg, ogi, ogms, ogsf, rxno, and vto.
It seems the authors have …