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I’ve just started looking at RNA graph construction. Ideally, I’d like to generate a KNN representation of the RNA. This function is currently implemented for proteins by using the `graphein.protein.e…
rg314 updated
2 years ago
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I want to use Linux RNAfold program to produce "Centroid secondary structure" type plot,but when I use
"RNAfold -p -d2 --noLP < [test_sequenc.fa](http://rna.tbi.univie.ac.at/RNAfold/LbkYnmZLSZ/test_…
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Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD
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Following from MF SLIM project Val noted that: GO:0140691 RNA folding chaperone has only a single annotation in the entire GO. Maybe RNA binding would suffice for now?
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We appear to have a problem despite successful compilation and the files seem to be in the correct directory.
Have we overlooked something?
Thanks
```
Compile:
string DATA="/data/prog…
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Current rRNA hierarchy looks like this:
```
rRNA
|_large_subunit_rRNA
|_rRNA_21S
|_rRNA_23S
|_rRNA_25S
|_rRNA_28S
|_rRNA_5S
|_rRNA_5_8S
…
sjm41 updated
2 years ago
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Hello,
I have a simple question regarding the different ThreshKnot implementations available:
- In the LTF paper, you mention as reference for ThreshKnot the following paper: _L. Zhang, H. Zhang, D…
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Please see @Polkas comment
https://github.com/insightsengineering/teal/issues/617
Scope:
- include BS4 source into teal or/and teal.widgets
- check what doesn't work and need fixes
- create the…
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Would be nice to have a function which returns the basepair probabilities as a vector so it can be used later to label visualizations with the right colors.
It seems like the RNAFold webserver does t…
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This is a record of the issues that we have with the updating InterPro2GO pipeline and with implementing Rfam2go and improving IBA pipelines wrt making Protein2GO the source.