-
**The following is my make process:**
```
[usr@login bcftools]$ make
cd ../htslib && make config.h
make[1]: Entering directory `/public/home/usr/bin/htslib'
echo '/* Empty config.h generated by Makef…
-
Was working as of d4d42ca7615dcf3014e5746c284b2f14b3ade8c0
I assume the ploidy changes have broken it?
`````` test_vcf_check_merge:
/Users/jpiper/bcftools/plot-vcfstats -m /var/folders/cl/ys6m6b…
-
The bcftools executable links to the static library in the included htslib-1.2.1 directory:
> gcc -g -Wall -Wc++-compat -O2 -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfqu…
-
Hi,
I am trying to compare two vcf files (with Indel information)..
I generated the stats (file.stats) file using the two vcf files. But getting the error while using the plot-vcfstats to make the p…
-
Hi,
I have generated vchk file using bcftools stats, and then plot-vcfstats could recognise the format and gave me some error like this?
Can you please to see if you can help on this?
Thanks,
#####…
-
Hi John,
I was trying to compile latest version of bcftools (1.2) with polisomy but an error appeared and broke the compilation. Logs for the "make" command are at the end of the post.
I know it is …
-
Hi,
I compared two vcf files using "bcftools isec" and vcf-compare and I am seeing different results. Can you explain why?
I am using bcftools 1.2.0 and vcftools 0.1.12b. The command line options tha…
-
> Parsing bcftools stats output: raw.vcf.gz.stats
> Plotting graphs: python vcfplots/plot.py
> Traceback (most recent call last):
> File "vcfplots/plot.py", line 155, in
> ax1.legend(numpoints=…
kisun updated
10 years ago
-
Hello,
I am very new to bcftools, I am trying to plot vcf-stats. So, I generated .vcf.gz.stats using bcftools and gave the following command to generate plots
mkdir plots-stats
plot-vcfstats -T test_…
-
Here is the command that fails. This does not happen on every BCF
``` bash
$ bcftools stats -s - chr22.phase3.bloat.bcf
# This file was produced by bcftools stats (1.1-82-g4f3a265+htslib-1.1-87-g3c4…