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I have run the docker-compose.yml in devops/dsa and got HistomicUI up and running. BTW I had trouble with Mongo refusing connections, during this part. Maybe put in a note to delete all the contents o…
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## Description
The transformed images of ImageJ color deconvolution plugin and skimage.color.separate_stains() are not the same, while transformation matrices are the same. In my case, after separa…
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# Summary
While trying to build with ACL option enabled on aarch64, I get lots of link errors due to undefined references with Arm Compute Library (ACL).
```
[ 417s] [ 26%] Linking CXX shared li…
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**French :**
Voici les points qui me semblent importants à connaître et/ou à modifier en ce qui concerne l'évolution de "locallab".
Bien sûr ce qui suit est mon point de vue, fondé sur ma percepti…
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I've been working on this code base for quite a while, but I have still yet to see a working example. I've played with calculating the loss function differently, all sorts of hyperparameters, and diff…
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I was trying to apply a pyramidal bspline registration as described in the diffeomorphic_bspline_2d.py script here, but after applying the transformation to the RGB channels I got the following odd re…
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## Purpose
This issue follows the PR #4613, the[ issue reported to sphinx-gallery](https://github.com/sphinx-gallery/sphinx-gallery/issues/655) and the addition of optipng proposed by @larsoner in …
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**Bug report** (maybe I'm just misunderstanding something):
```python
@dask.delayed(pure=True)
def load_image(filename, coords=None):
return None if filename is None \
else clip_ima…
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Can you clarify the function and usage of DeconvolutionModule.seperateStains?
I have a Hematoxylin + AEC staining from which I would like to obtain an image representing only the AEC with the appropr…
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Requesting access to all 3 channels for subcellular detections, useful when handling non-standard stains (Brightfield Other). It would be much easier than juggling around the detections and color vect…