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Metaclust, a database clustered by linclust protocol in MMseqs2, is becoming smaller with each release. Metaclust95 2017_01 has 97G.
Metaclust 2017_05 has 60G.
Metaclust 2018_01 has 28G only.
Shoul…
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When I am trying to run mmseq_update on some data set below error was popping up.
ERROR:
mmseqs_update: Problem with data file. Is it empty or is another process readning it?: Invalid argument
commons…
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Hi,
is it please possible to set a limit on the amount of memory MMseqs2 uses for its computations? Or to set the number of computation chunks?
I know from the MMseqs2 wiki it automatically detects …
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I know that could be quite unpopular clustering strategy, but did you consider clustering based on comparing profiles? That would require adding additional step in cascade clustering for clustering wi…
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Based on the latest version from Master, it appears that the `--target-cov` option is not currently working with mmseqs cluster. Specifically, something like:
`mmseqs cluster DB DB_clu tmp --min-se…
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I'm trying to create clusters of a number of pre-clustered databases, all stored in multi-fasta files. The `createdb` command seems to runs fine on all files, however, the `cluster` command leads to a…
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I just tried building the latest version and using mmseqs cluster, but it fails with this error:
```
Could not open data file tmp/clu_step0!
mv: cannot stat `tmp/clu': No such file or directory
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