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Hi guys,
How feasible is Nested sampling - a la https://github.com/js850/nested_sampling
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Good morning guys,
I am currently trying to get gpflowopt up and running for some optimization problem. Naturally, I first tried the example you provided in the [documentation](https://gpflowopt.r…
jbi35 updated
6 years ago
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Hi there,
I was trying the latest conda version of YANK 0.22.1 running ABFE on toluene bonded to lysozyme. To perform 1000 YANK iterations (complex state) by using a GTX 1080 the required simulation…
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Hi,
I am trying to run Turing on a Windows 7 machine with Julia 0.5.2.
Here is my configuration as returned by the versioninfo julia command:
> Julia Version 0.5.2
Commit f4c6c9d (2017-05-06 1…
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As requested by @MichaelClerx :
MCMC :
i)AdaptiveCovariance, DREAM
ii) Netsed sampling
iii) Particle based ones--PopulationMCMC, SMC
iv) Likelihood free ---ABCMCMC, ABCSMC …
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This is typically referred to "Galilean Monte Carlo (GMC)" (see, e.g., [this](https://arxiv.org/abs/1312.5638)). The basic idea is to initialize a particle with some velocity `v` and launch it in a ra…
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Hi all!
Currently our main methods faill into three main packages: `optimisation`, `mcmc`, and `nested`.
What would be a better way to split these (and future) methods? Optimisation and inferenc…
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```
=========================================[ ERROR: Turing ]==========================================
LoadError: could not spawn `mingw32-make`: no such file or directory (ENOENT)
while loadin…
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in examples: gaussian.py
# Define HMC parameters
kernel_width = 0.1
n_chains = 1000
n_iters = 200
what is the diffetence between n_chains and n_iters?
it seems that both of …
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In that case, users could do something like this:
```
mcmc = ...
while True:
result = mcmc.iterate()
if result.is_finished():
break
if every 100th iteration:
stor…