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Hi again, after you solved the last issue with the report.tsv i now notice i get far more missing values in the iBAQ columns than the LFQ (which looks similar to what i would expect having previously …
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Hi,
I have downloaded TCGA-LGG data of Proteome Profiling.
Then I have the following error when running `GDCprepare`:
``` r
library("TCGAbiolinks")
query_lgg = GDCquery(
project = "TCGA-LGG",
…
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I have gone through the script. Unfortunately, as there is gromacs 2021 version is available on conda.
SO, getting errors for pdb2gmx.
Kindly help me to resolve by using new versions of the rel…
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Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD
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Hey there, firstly let me just say its super nice to have this available to process DIA-NN outputs further. I am getting an error running the protein groups calculations.
The error says "error in […
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### Week 1 - Get to know the community
- [X] Join the communication channels
- [X] Open a GitHub issue (this one!)
- [X] Install the Ersilia Model Hub and test the simplest model
- [X] Write a m…
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### Bug summary
When I was calculating my protein-ligand complex, an error occurred during the processs
### Terminal output
```bash
File "/home/yxp212121/yxp/amber20/miniconda/bin/gmx_MMPBSA",…
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Hi,
I used conda to install vadr-1.5 and downloaded the monkeypox virus model, and an error occurred while I was trying to annotate the monkeypox virus genome,
![image](https://user-images.githubuse…
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We need three new values for the controlled vocabulary of `_struct.db_name`:
`Name` `Description`
`PDB` `Protein Data Bank`
`PDB-Dev` `PDB-Dev`
`Other` …
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Not sure if I'm missing something, but if I want to create an amino acid graph and store `rsa` values in the nodes, I can do the following
```python
config = ProteinGraphConfig(edge_construction_…