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Hi,
I recently had to reinstall cellrank in a conda environment and since reinstalling the cellrank functions seem unable to load `petsc4py`.
I've followed the tutorial to install petsc4py via co…
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I just updated from v1.2 (conda) to v1.3 (pip). When I rerun a notebook, I noticed the Schur decomposition results and macrostates computation results are very different. The older 1.2 version makes…
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Study and consider implementing this approach:
https://opus4.kobv.de/opus4-zib/frontdoor/index/index/docId/5573
There might be something to do about the interpretation of the resulting vectors in te…
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Has anyone done this before or have any tips about how to proceed? The documentation says that this feature still needs to be documented and I'm new to nim and neo.
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We have briefly discussed this error before and from what I got, this should be about to be fixed anyways. I just wanted to leave this here for tracking and maybe to get a time estimate from you guy…
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## Environment data
- Language Server version: v2021.10.1-pre.1
- OS and version: Windows 7
- Python version (& distribution if applicable, e.g. Anaconda): 3.8.11 Anaconda
## Sample code…
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**Description**
When running an embedded fluid dynamics simulation with MPI Parallelism type and default settings for AMGCL, the following run time error is returned: **Error: Zero pivot in ILU**
…
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It's not really a bug, I think it's an inefficiency. For certain matrices, which are reducible, or almost reducible, it can take very long to compute macrostates because of the time pyGPCCA takes to…
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to do's before this release
- [ ] finish pyGPCCA integration, make sure tests pass (#472)
- [ ] close the legend plotting PR (#470)
- [ ] write release notes
I will suggest text for the release…
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I updated msmtools to the most recent version of the fork of Bernhard. I run `python-vendorize` etc. to make sure the update takes place. Now, when I try to run `estimator.compute_macrostates`, I get
…