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It would be nice to consider core support for simulations occurring at different timescales. Currently time is not a concept in FLAMEGPU on simulation ticks. To complement this we would need to allow …
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Recently, I launched a 1.2 Million Atom simulation and it works stably! There is a performance hit which isn't surprising (benchmark numbers are from 1 nanosecond simulations on CUDA):
- 4070 Ti get…
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Hi, can we please request the following four terms to be created:
Occurrence probability of Dinophysis acuminata (ITIS: 302: WoRMS 109603) in the waterbody
Occurrence probability of Dinophysis ac…
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# Some items to think about for the next steps (2023-10-28)
## Target format
- Do we want to provide the completed material as:
+ an academic article with a detailed appendix?
+ a persiste…
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### **Bug: Energy Conservation Issue in Krebs Cycle Simulation**
#### **Description**
The current Krebs Cycle simulation produces plausible metabolite changes but does not conserve energy correctl…
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### Version
1
### DataCap Applicant
University of Technology Sydney
### Project ID
11
### Data Owner Name
University of Technology Sydney
### Data Owner Country/Region
Australia
### Data Own…
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The authors present an implementation for a numerical solver specifically design to tackle continuum electrostatics models. Specifically, the authors present a solver for the Poisson-Boltzmann equatio…
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We want a function that generates pedigrees under simple parameterized models (e.g., Wright-Fisher, Wright-Fisher with inbreeding).
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@jmdetloff here's some starting points
## Goal
A UI which enables users to quickly simulate models under alternate conditions (e.g., knockout a gene, change the initiation concentration of a drug,…
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Hello Marco !
I now have a new optimization problem, which is very demanding computationally (several biological systems in different MD simulations at each evaluation during optimization) and most…