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Low priority, but growing due to growing use of HCP-style analyses.
See PALM for an template:
https://github.com/andersonwinkler/PALM/blob/master/palm_ciftiread.m
https://github.com/andersonwinkl…
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Hello,
I am attempting to run a group GLM of subject level results. For each subject (M=68), I have the `_left.rds`, `_right.rds` and combined `.rds` file saved out from the subject-level run. Each…
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Hi!
Lately, I've been experiencing problems when running ciftify_subject_fmri. It seems like the subcortical structures are no longer recognized; I'm getting the following warnings/erros:
> WARN…
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@edickie I downloaded ciftify using pip install ciftify to be run on windows subsystem for linux. I have my fmri data preprocessed using fmriprep and obtained as a cifti dtseries file. I want to perfo…
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I want to only run files in session **ses-LOC** with **task-retinotopy**.
I wrote my Filter.json as:
> {
> "t1w": {
> "datatype": "anat",
> "session": "ImageNet02",
> "acquisition": null,
> "…
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Using a 21-subject dataset, 8 runs per subject, and constructing workflows to only run on 4 subjects, I get memory usage of ~14GiB before the workflow even starts running.
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Hi,
I tried using your code to regress out nuissance variables from the cifti dtseries file. My fmri data was preprocessed using fmriprep. Please clarify what it means when you say, "Any filtering/…
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Dear community:
I have the following error. I tried running from sudo su but the same error pops up.
ciftify_recon_all --surf-reg FS --fs-subjects-dir '/media/andraderenew/Elements/backup_1TB/ima…
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There are a few different situations that we probably want to support:
1. Raw BIDS dataset + full fMRIPrep derivatives
- At minimum, we'll have access to the transforms necessary to warp the d…
tsalo updated
1 month ago
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The problem
Currently: https://github.com/edickie/ciftify/blob/master/ciftify/bin/ciftify_meants.py [line 100]
```
ciftify.utils.run(['wb_command', '-cifti-parcellate',
settings.func…