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Hi,
I am getting the following fatal error while compiling COPASI with graphical UI support. The comand line version compiles without any errors. However, for the purposes of my usage, I would like …
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Hey Ciaran,
What's the difference between PyCoTools and the python bindings for COPASI (https://github.com/copasi/COPASI/tree/develop/copasi/bindings/python/examples)?
My goal is to take a model…
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Heya, hope you're well!
I was wondering if simultaneous parameter estimation was possible with copasi/basico. For example, if you had two experiments you want to fit to, and of the two parameters t…
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Instead of lxml, upgrade to process it with BasiCO.
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Hello,
in trying to bring our software (COPASI, http://copasi.org) so we can use it from Galaxy I've encountered the issue, that uploading our supported file formats fails with:
```The uploade…
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Such as
- Steady-State Analysis
- Stoichiometric State Analysis
- MCA
- Lyapunov Exponents
- Time Scale Separation
- Sensitivity Analysis
Todo
- [ ] Map each COPASI method/parameter to a Ki…
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The attached Copasi file generate the attached SED-ML file. In the SED-ML, we have:
where 'ds_4_task3' doesn't have a label.
Is this an issue…
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@hasanbaig asked, "We also have to modify settings.py file (may be we can include it in the instructions?)"
Perhaps we can change/update the `settings.py.EXAMPLE` to fully work with the Docker buil…
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Hello,
I am working with an inhouse kinetic model (SBML format) at ITQB NOVA, and while I can run simulations on MEWpy 2 res = sim.simulate(t_points=range(0,800,50))
3 res.find()
File c:…
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There seem to be two related bugs regarding time series requesting value output:
1) When output start time is not defined by the user, using values will result in the first time value being overwri…