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When calling :
hidden_states = model(inputs)[0] # [1, sequence_length, 768]
we receive traceback:
in :1 │
│ …
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I work on Gram-positive actinobacteria, which can frequently encoded alternative starts. I've noticed some genes are annotated with a wrong start (frequently too long to comply with an ATG start inste…
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Hello:
I run the command `prothint.py seq.fna --workdir ./temp`. I get the error
```
warning on: gm_et_linux_64/gmhmme3 -m temp/GeneMark_ES/output/gmhmm.mod -f lst -n -o output/gmhmm/dn…
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There are some DNA strings in the datasets that either partially or entirely consist of masked strings, e.g., the 7th sequence in the DemoHumanOrWorm training set (checked via dset[6]), is a string of…
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Hi~ I am trying to train a bonito model from scratch.
To obtain my training data, i basecalled the reads with the command as below:
```bash
data_path="~/codes/bonito/data"
key="Acinetobacter_bau…
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We've noticed some issues with the basecalling of some repeat elements on the PromethION dataset our lab generated. To address this, we plan to tune the original pre-trained model by feeding the model…
ktan8 updated
4 months ago
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Dear Team,
I have been working on developing the generative model for DNA sequences. For a fair comparison, I compare different algorithms in the unconditional generation case. It seems that DDSM f…
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Hello, I have a strange problem with train time.
I executed `evc-train -c configs/exps/4k4d/4k4d_0013_01_r4.yaml,configs/specs/static.yaml,configs/specs/tiny.yaml exp_name=4k4d_0013_01_r4_static` …
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A user in [GHelp](https://help.galaxyproject.org/t/no-option-available-to-select-the-reference-genome/7272) requested the hg38 genome in BWA-meth, required for the [DNA Methylation data analysis](http…
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Seems to be a lot of missing content.
Libkey Nomad
Jan Interviews Nobel Laureate Bill Kaelin
PubMed getting a makeover
Technical training
Virtual Library
DNA Day
etc.