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Related to #194, I could not find out how the model output is validated against out-of-sample data in the model overview or any of the cited papers (apologies if missed). Do we need some code to per…
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Direct comparisons between Python and SAS
From 1989 to 1995
- [x] Population demographics: age / sex
- [x] Non HIV death rates
- [x] Number of short term partners (by age and sex)
- [x] Partner …
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The demo vignette includes examples for each category of plot we expect but these examples are taken straight from ggplot2 docs.
This works for the short term but in the medium term, it would proba…
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**UPDATED**
The following 14 pre-prints don't appear to have reviews and don't have an issue in our repo:
- [ ] Novel coronavirus 2019-nCoV: early estimation of epidemiological parameters and epid…
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To help me with annual reviews, promotions, grant applications, and generally being able to justify putting time into maintaining and improving EoN, it would help if I could show impact of the package…
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# Applications
- Serial interval and incubation period estimation for Monkeypox (also used as part of CDC reporting). Censoring adjustment but not right truncation adjusted. Based on `EpiEstim` whi…
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Hi @adamkucharski - something I noticed when looking at this repo as a reference, so thought I'd flag - the ODE models call `.prepare_population()` internally, which scales the contact matrix by its …
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# 🙋 Feature Request
An option (toggle) to correct observed case counts considering the widespread testing problems in many countries. It could either use t+18 deaths / IFR (~1%) or test positivity da…
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I tried to pack synthpops-1.8.0, but it showed the error here:
![1625459608(1)](https://user-images.githubusercontent.com/50813700/124417592-07be3d00-dd8c-11eb-97ff-7b742a2f3608.jpg)
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How do you add work locations for the SPC after each individual has been mapped to an individual in the NTS? We start with the input data (let's call it spc_activity_chains). Each individual now has:
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