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Hey ! Thank for your tool :)
I am looking for gene involved in iron oxydation in genomes and MAGs. When Cyc2 is found there are not proteins sequences associated. It is the only gene for which it …
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Dear Arkadiy,
I am getting the error below - could you help me understand what is going on and how to fix this?
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Consolidating summary files into one master summary file
Identifying genomic…
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Hi, I'm interested in identifying iron related genes within a metatranscriptomics dataset. I have attempted providing a fasta with gene (nucleotide) or protein sequences as bellow, but I hit an error …
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Hello, I ran FeGenie successfully (thanks)
I was wondering the meaning of such error message (in bold) at the end on the job. May you tell
I ran the following command./FeGenie.py -bin_dir ./FeGeni…
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Error in hclust(d = dist(x = fegenie.scaled)) :
NA/NaN/Inf in foreign function call (arg 10)
Calls: as.dendrogram -> hclust
Execution halted
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Hi,
I would like to create conda package for FeGenie.
In order to do this, having a license file that allows distribution in the repo is required, and having official tagged release is preferable.…
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Hi Arkadiy,
Thank you for all that you do! I am noticing that FeGenie renumbers/names contigs within individual MAGs' depth files. For those of us who cross-reference output from different tools, li…
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Hi,
Thank you for your tool. I am currently using FeGenie on contigs and have tried to use it on ORFs as well. My results are quite different and those for ORFs are incoherent. I have the impressi…
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Hello Arkadiy,
--norm, if include this flag, the gene counts for each iron gene category to be normalized to the number of predicted ORFs in each genome or metagenome. Without normalization, FeGen…
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Hi there, and thank you for this tool! I am trying to run some metagenomes through FeGenie and have been successful so far, but I am trying to understand the numbers in FeGenie-heatmap-data.csv a litt…