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stats are here: https://docs.google.com/spreadsheets/d/1kTSYUTrgDXpXlXJpekG3ifRCbjjIqinnI3vH3DgU_BU/edit?gid=0#gid=0
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Dear all,
The proposal has been made to obsolete GO:1903562 microtubule bundle formation involved in mitotic spindle midzone assembly
see https://github.com/geneontology/go-ontology/issues/2…
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```
✗ getgaf mgi | egrep '\tprotein\t' | tail
PR Q9Z2D6-2 mMECP2/iso:2 located_in GO:0005634 PMID:18334558 IDA C methyl-CpG-binding protein 2 isoform 2 (mouse) mMECP2/iso:2|MECP2b (mouse)|MECP2e1…
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Hi, thanks for making IsoQuant, when i run my ont sequencing data, i got the following error. would you please kindly help to fix it. many thanks! :)
Command line: /home/cario/bin/miniconda3/envs…
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Hello,
I'm using the development version of SCENIC+.
When running the snakemake pipeline, it seems to get stuck on 'download_genome_annotations'...
Contents of my Snakemake folder:
-rw-r…
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Processing my input data with your preprocessing and annotation pipelines, I get the input files for running the seed gene discovery pipeline (except the phenotypes parquet, which I created).
In `rul…
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Hi,
I think I adjust the annotation file as required:
![image](https://github.com/zolotarovgl/GeneExt/assets/174808557/d915ba1e-2806-49ec-b1c6-8467fadd7dc1)
and I ran like this:
python geneex…
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Hi,
I'm running isoquant for two species with a relatively small genome size ~400Mb and around 20M reads (35G of fastq).
After 1 hour of run, the analysis does not progress. Since I run this job …
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**Describe the bug**
Hello. I seem to be getting an error at the get_search_space step in the scenicplus pipeline with snakemake. Any immediate thoughts about why this could be? Should my region se…
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Hello @kimrutherford and @ValWood, first congrats on managing to pass the submission pipeline!
I noticed that the new submission no longer includes the mitochondrial chromosome sequence. I know tha…