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Some notebooks have been broken recently by changes in packages, eg
gurobipy 10 -> gurobipy 11
pandas 1 -> pandas 2
gensim not compatible with [SciPy 1.13.0](https://github.com/scipy/scipy/releas…
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## Summary
The Gurobi interactive shell (`gurobi.sh` / `gurobi.bat`) is being deprecated. In the next major release these scripts will emit a deprecation warning, and in a future release they will …
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Why can I not run OSP for `--osp_upto_k` values greater than 16? Whenever I set the values to some high numbers such as 200, I get the following error:
```
Traceback (most recent call last):
F…
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Hey :)
**Is your feature request related to a problem? Please describe.**
From my point of view, the MOSEK IIS in cvxpy is hard to interpret since it is not clear which particular constraints and …
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I'm trying to test the pipeline with provided model **ENGRO2.xml**, but the getGPRsFromModel.py said that it was not a valid SBML model (The wrong information is attached below). I have validated the …
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**Snakemake version**
7.10.0
**Describe the bug**
When gurobipy is installed in the conda environment snakemake will use pulp to check whether a license is available before running your snakema…
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The pieces are all there for this in gurobipy v10 and since everything would be a 1D operations performance should be very good. We would only enable the extension for gurobipy>=10, and would likely w…
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Hello @cdanielmachado, other developers and all in the community,
I am interested in performing analysis on my genome-scale community model, which I created using CarveMe. Specifically, I want to u…
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For some models it is not possible to apply `deepcopy`, because the reaction names may match reserved names of the gurobi LP format—see [gurobi docs](https://www.gurobi.com/documentation/9.1/ref…
sirno updated
3 years ago
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Hi,
I was looking into memory consumption a little, and it seems that that passing an LP to the solver (Gurobi in this case) using the .mps format has a significant memory overhead. Here using mps:…