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Use gist https://gist.github.com/markziemann/67cd231fa450c082b88beb3d5d29fd98
to perform HC with
* PASS only samples
* PASS+WARN samples
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Hi,
After I trained my model, I wanted to make clusters on similar topic by using visualize_hierarchy but the result is not that great. The topics in each clusters are not really related. Is it bec…
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### Result for : df-ing the label and concatinating the label with the df-being-clustered
![image](https://cloud.githubusercontent.com/assets/17151758/24992130/ad153b66-1fed-11e7-974a-80882a484781…
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**Category**: general
**Repository**: https://github.com/dancbeaulieu/QAOA_IEEE
**Members**:
- Daniel Beaulieu, Dan Beaulieu , Deloitte Consulting LLP
- Anh Pham, andpham, Deloitte Consulting…
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Hello,
I was wondering if there was an automated way for me to change all the names of 'My Compounds'? I have many compounds and manually changing the names of each would be rather tedious.
Than…
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I have programmed for **Hierarchical Clustering Algorithms** in both R and Python.
Please help me create a explanatory markdown documentation for the same.
Link for the code is [here](https://gi…
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Motivation: why do we need hierarchical when we have already kmeans?
Vocabulary:
* divisive clustering: ...
* agglomerative clustering: average, weighted, median, centroid, Ward
Sub-tasks:
* …
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# Load MetaboAnalystR
library(MetaboAnalystR)
# Clean global environment
rm(list = ls())
setwd("D:/MetaboAnalystR/PJ4")
mSet
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**Page 361** Questions about the flat clustering algorithm
1) Intuitively, how to move the seed around? And how to do this efficiently?
2) What if the seeds happen to be the same class? In theory, t…
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Moving here [miaViz issue #40](https://github.com/microbiome/miaViz/issues/40)
Row/col sorting based on angle on MDS projection is implemented in SEtools R package.
The [vignette](https://www.bio…