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please could you add genetic length in cM to the final post-masked .match files. Ideally these will be all the segments that have been used in the relationship estimation step.
We agreed to adjust …
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Thank you for sharing the nicely commented code. I am reading the accompanying paper (Taylor et al 2019 Estimating relatedness) and trying to apply this method to our own SNP data. However, I am not v…
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Hello,
I'm now looking at the `truffle.segments` output file and trying to retrieve the actual markers IDs that border those segments. To do so, I'm looking at the `VARSTART` and `POS` fields in th…
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Hi,
I have run the FastSMC with T = 50. I want to calculate the DRC statistics for my dataset. Is there a script to calculate this statistics from the FastSMC output?
Thanks a lot!
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Hi there,
I'm using the C++ compiled version of Prepare Decoding to create decoding quantities files for fastSMC, focusing on analyzing IBD segments. I've got demo files from ASMC_data and frequen…
7JVST updated
8 months ago
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Hi,
This is an awesome work! I am applying FastSMC in UKBB. For the input - genetic map file, what would you recommend one to use/generate? The described format looks like different from standard …
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After a brief chat with @petrelharp we thought it might be time to revisit the general structure of https://tskit.dev/tskit/docs/stable/stats.html, because (for instance) it doesn't mention the LDcalc…
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Building on #898 and using the 'matrix multiplication' in WIP #1246 (i.e. genetic_relatedness_weighted), we're trying to implement PCA for tskit. This appears to be working :tada: but is rather slow c…
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when Introduce mariadb:10.11 as library, it stuck when started, Use the following commands to replicate:
```
wget https://raw.githubusercontent.com/unikraft/catalog-for-maintainers/main/utils/start-…
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Can this software be used to identify the kinship of non-human primates?