-
Previously delta extensions have only been allowed up until another gene. @vpbrendel suggests allowing full delta extension regardless, and simply keeping track of overlap between iLoci.
-
It would be helpful to include an orientation attribute for intergenic iLoci, showing the orientation of the flanking piLoci/niLoci. There would be 4 possible values.
```
>> Both genes forward
< …
-
It doesn't make sense to have, for example, a 2bp iLocus. The idea behind this parameter would be to set a lower limit on iLocus length. If in parsing iLoci we find an iLocus that does not meet this l…