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What happens if we have missing data? Nans can really cause a headache!
One strategy is to "impute" the missing data based on strategies (ie try to fill in the blanks). The [impute.SimpleImputer](h…
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Hi
First of all, thanks for developing TRTools! I have a question regarding imputed STR input files.
I have a Beagle (v5.4) imputed VCF file that looks like below:
>##fileformat=VCFv4.2
##FI…
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Hi Ruochi, thanks so much for developing Higashi & FastHigashi.
I've been trying to obtain the cell-level imputed with neighbor matrices following the newer Fast-Higashi [tutorials/Ramani et al.ipy…
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I am using the demonstration data "penncath" from the tutorial of the R package [bigsnpr]. I have verified that there are no missing values in the imputed obj$geno_imputed data, both by SNP and sample…
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Hi,
I've encountered an issue with retrieving model fit for imputed data. A similar issue was reported before (see https://github.com/michaelhallquist/MplusAutomation/issues/38#issuecomment-3032677…
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Hi.
Im a japanese Hotline server / client user
Im excited to hear that new Hotline client has arrived.
I downloaded the software and tried it out right away.
Japanese is displayed normally, but …
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Hi,
First of all, congrats on a nice package! I read the medium article and immediately tried it.
One thing I am wondering is, is there a way to use imputers from sklearn with pdpipe? Or could …
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I am attempting to meta-impute the results of two different imputations with the following command: `MetaMinimac2 -i imputed/MEGA_TPMD/38/vcf/chr${chrom}:imputed/MEGA_KG38/38/vcf/chr${chrom} -o metaim…
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This is a nice method! I'm a masters student at the University of Waterloo working on wastewater surveillance in Canada.
I wasn't able to get the tree imputation working but the common_allele metho…
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Hi,
I am currently working on a project where I plan to use BrainGENIE to impute brain gene expression from blood proteomics data. However, I noticed that your model was developed using RNA-seq dat…