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https://github.com/openjournals/joss-reviews/issues/3934 Hi, I hope these comments help in improving the paper.
**Comments**
1. The paper's title could see a change. It says "PySS3: A new interpre…
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### WHY
We need to reveal how the black-box model engine operates for user to understand and trust the systems (where they do not know the basis for the current outcomes and lack insight how it wor…
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**Summary !!!**
- **BioModel Name**: Sun2017 - predictive and interpretable models for PAMPA permeability 7.
- **BioModel Tag**: fair AIML, Machine learning model
- **Metadata Comments**:
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Add Chapter 12: Interpretable machine learning
We already have material from ESDS [here](https://github.com/stineb/esds_book-gitlab/blob/e27fbc390fa302bc99be3d1796c4e75dc6ee1c41/07_supervised_ml_2.…
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Some of the annotations found on pubchem, can not be loaded by RDkit.
For example: C[N+](C)(C)CCOS(=O)(=O)[O-] GIves a error of Valence =8 for the Sulfur.
I will dive into this later to check if …
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[Yidi Sun](http://www.cebsit.cas.cn/yjz/qnyjy/syd/yjfx_156298/), Bioinformatics, CAS
[Su-In Lee, U of Washington](https://suinlee.cs.washington.edu/su-in-lee/title-abstract-bio)
[Scott Lundberg, MSR…
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It states to have an "An efficient implementation of the permutation feature importance algorithm discussed in this chapter from Christoph Molnar’s Interpretable Machine Learning book."
If so, one …
pat-s updated
3 years ago
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Accumulated local effects describe how features influence the prediction of a machine learning model on average. ALE plots are a faster and unbiased alternative to partial dependence plots (PDPs).
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Random links I have visited:
https://towardsdatascience.com/the-mostly-complete-chart-of-neural-networks-explained-3fb6f2367464
https://medium.com/@andrewtch/diy-ai-the-series-597e82131cb2