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Hi,
I'm wondering why is OrthoForest implemented in purely Python it seems?
https://github.com/py-why/EconML/blob/d1baba1e676d5fa8c90b33bf21d806964ae12ec9/econml/orf/_causal_tree.py#L53
vs l…
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We have a rich set of examples covering a very broad range of issues, but they're not necessarily easily discoverable via the section on the bottom of the API pages.
This meta-issue is to keep trac…
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```
$ pyseer --version
pyseer 1.3.9
```
When running a lasso classification on some E. coli genomes I get the following error (the value of `--cor-filter` is irrelevant)
```
$ pyseer --pheno…
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Tasks relating to repository management.
Migrated from https://app.assembla.com/spaces/plus/tickets/1059/details
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Hello,
Would it be possible for `skggm` to distribute Python wheel files? Wheels do not require compilation when installing, so users would not have to install `gcc` and other compilation dependenc…
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We have methods for associating individual genetic variants and phenotypes (https://github.com/pystatgen/sgkit/pull/16, https://github.com/pystatgen/sgkit/pull/66), but inferring associations with gen…
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Hi, I did a test run using the Escherichia coli Nissle 1917 complete genome (NCBI ACCESSION: CP058217). I expected the microcin cluster can be identified since MIBiG has the BGC0000589: microcin M bio…
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#### Description
This is a feature request in allow flexibility in elastic net, which allows the user to apply separate penalties to each coefficient of the L1 term. The default value of this penal…
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Hello!
I got to analysing after clearing the startup hiccups of #252.
A succinct summary of the original data set:
- About 380 _Listeria monocytogenes_ strains were sequenced
- The strains we…
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### Description
While looking at any device that generates stress or uses stress while wearing the engineering goggles, show a visual bug. The text screen that pops up has the "Kinetic Stress Impac…