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In this issue, I explore how removing the brain and the brain stem improves the performance of the model for segmenting spinal lesions in MS.
The brain/brain stem were removed using the contrast a…
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@thuhoainguyen Please write here (or attach the file) about thesis objectives. I will help you with the code but I need to understand the objectives...
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Opening this issue thanks to a comment from @leelisae regarding some missing lesion mask at M0.
Related issue #96
On it now with the following config file:
```yaml
FILES_LESION:
- sub-edm1…
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There is a pretrained model for liver segmentation at https://github.com/IBBM/Cascaded-FCN but no Docker, so packaging it to work with DeepInfer would take some work
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# Description
## Data
- `nih-ms-mp2rage`
- `marseille-7T-iso-mp2rage`
- `marseille-7T-aniso-mp2rage`
As discussed [here](https://github.com/ivadomed/model_seg_ms_mp2rage/issues/75#issuec…
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Suggestion from @laurentletg
Currently, a use case is defined with a [config file](https://github.com/neuropoly/slicer-manual-annotation/blob/39aa6197c03221f369ddfbcdad1a15cd9a9515cd/SlicerCART/src…
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I'm running some tests to see how, and how well, LST-AI works.
1) Again I've got this error ` END OF LEVEL 2
....
Limiting the number of threads to 20
/home/giorgio/anaconda3/envs/lst_env/bi…
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Hello Bickel,
I'm reading your codes in these days and learned many from these great codes and thoughts.
But I noticed that in this 'Issues' discussion board we all talk about liver segmentation. Ho…
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In this issue, I detail the exploration of training an nnUNet model.
The code is in branch `plb/new_nnunet`.
The script `nnunet/convert_msd_to_nnunet.py` takes the json file of an MSD dataset and…
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### Title
Machine Learning for Stroke Lesion Segmentation
### Short description and the goals for the OHBM BrainHack
We'd love for people interested in machine learning for image segmentation to tr…