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I was wondering if there is a way to do webshot of these 3 webpages:
https://my.locuszoom.org/gwas/264522/region/?chrom=2&start=211290507&end=211790507
https://azphewas.com/geneView/7e2a7fab-97f0-…
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On Manhattan Plot page when you click a variant have an option to go eitherto the LZ page or to the PheWAS page (to make navigation to the PheWAS plot less clunky).
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Filtering operations allow controlling which elements are rendered.
However, an open tooltip will remain even after its parent element has been removed by a filter + re-render operation.
## Step…
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I need to plot several regions using LocusZoom. For some regions plotting is very fast, only taking a few seconds. For others I have experienced waiting for 30 mins+ on "Extracting region of interest …
oyhel updated
4 years ago
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UK10K has a track in BD http://www.uk10k.org/dalliance.html and these rolled their own http://locuszoom.sph.umich.edu/locuszoomjs.php. I think we would like to have it look like the latter. We do not …
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Hello,
I am currently using the dabest_plot function to generate a swarm plot and I'm interested in setting a custom color palette. However, it seems that the function only allows selection from a …
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Hi, there:
I am trying to run "tabix my.GWAS.gz" file. my.GWAS.gz file is tab delimited and it has columns such as CHR POS SNP REF ALT BETA SE P N. However, I got the error messages of "[E::get_i…
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Hello, All
When I run locuszoom using my own LD file, I have the same problem which was posted as the following
https://www.biostars.org/p/194199/
Using user-specified VCF file to calculate LD wi…
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![图片](https://user-images.githubusercontent.com/67782379/145373838-f7a1e374-c9ef-4ba2-935b-c4342b955ac6.png)
When I made the locuszoom plot, I found that there was no LD information of the locus in…
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Hi,
I'm getting an error message regarding refFlat which I cannot immediately place. How should I interpret it?
In this case I'd like to plot a region near rs12936587 on 17:16543722-18543722. Th…