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I ran train.py and got error below
`Traceback (most recent call last):
File "/public/home/wangycgroup/public/02_Data/Internal/phage/train.py", line 86, in
loss = model(next(train_loader))…
ZTYyy updated
8 months ago
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There is a bug in the `pyproject.toml` file which prevents installation of `gigapath` as a package. For example, running `pip install -e gigapath` will result in an error similar to the following upon…
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Hello, you're doing a great job. I have a question: why do we need to shuffle the dataset when fine-tuning? What's the difference between shuffling and not shuffling the data?
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Hi, thanks for the great work! When fine-tuning GigaPath on our own dataset, it seems like the run is killed when the model is being set up during the train() call in training.py.
`# set up the m…
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Hi,
ClassificationHead class in `classification_head.py` tries to freeze the parameters of `self.longnet.named_parameters()`, which does not exist. Instead, it should be changed to `self.slide_enco…
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Hi, thank you and congratulations on your excellent publication. I was wondering if there were ways to visualize attention weights with this pipeline. I am aware that this uses Dilated Attention and w…
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Hi,
In the paper, the contexualized tile embeddings are aggregated by a AMBIL layer:
> We fine-tuned Prov-GigaPath and other baseline models on diverse downstream tasks. For Prov-GigaPath, we fro…
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Hello,
Thank you for the great effort to provide a version of LongNet! 😃
I noticed that I have some import issues, for example in the `LongNet/model.py` file:
```
ModuleNotFoundError: No mo…