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**Describe the bug**
Uploading my own T1-CE .nii and performing pre-operative segmentation yields an error "No radiological volume for {'timestamp': 0, 'sequence': 'T1-CE', 'labels': None, 'space': {…
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Opening this issue thanks to a comment from @leelisae regarding some missing lesion mask at M0.
Related issue #96
On it now with the following config file:
```yaml
FILES_LESION:
- sub-edm1…
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Thank you very much for this repository.
If there are some failed segmentation, is it possible to adjust it manually? as you can see in this example the psoas muscles are not fully segmented at the…
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🚀 The feature, motivation and pitch
# RFC: Multi-Gpu Python Frontend API
This RFC compares and contrasts some ideas for exposing multi-gpu support in the python frontend.
1. The current `multigpu_sc…
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Some relevant discussions:
- https://github.com/ivadomed/model_seg_ms_mp2rage/issues/56
- https://github.com/ivadomed/model_seg_ms_mp2rage/issues/13
- https://github.com/ivadomed/canproco/issues/20…
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Hello,
Thank you for your nice work ! I read your paper and I tried to reproduce some results, with the example you provide in this repository. My question about the segmentation is : how do you ge…
fhenr updated
1 month ago
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## 🚀 Feature
when we compute IOU
```python
import torch
_ = torch.manual_seed(0)
from torchmetrics.segmentation import MeanIoU
miou = MeanIoU(num_classes=3)
preds = torch.randint(0, 2, …
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I noticed that the recent commit has added the flag of "-st" for tumor segmentation, and I expect the tumor masks could be generated with this flag enabled. However, I cannot figure out how it would w…
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Hello,
Thanks very much for developing and sharing this package, I think it is a great step forward in analysing Visium HD data.
I was wondering if you could advise us on how to import cell segm…
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There is a slight shift in the GT segmentations of PSIR and STIR contrasts of the `canproco` dataset. We used these shifted segmentations in training the contrast-agnostic [model v2.4](https://github.…