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We currently have a couple of models under the [ivadomed organization](https://github.com/ivadomed): these are usually hosted in repository with name starting with "model_", with some exceptions (#548…
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**Describe the problem**
Previously with the ivadomed API, images were loaded internally by ivadomed which took care of file formats and input shape. The problem is that nnunet is more rigid concerni…
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This issue intends to compare performances between the model trained from scratch on `dcm-zurich-lesions-*` (#1) vs. a model pretrained on `dcm-zurich` for detecting compression sites and using those …
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This was briefly mentioned during the last ivadomed meeting.
The inference script is a nice wrapper for nnUNet. It's hard to see how we could avoid duplicating it in model repositories, but it woul…
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A motivating scenario: 30 epochs with `config/softseg_unet3D_unbalanced.json` takes around ~50 hours. The full 200 epochs is expected to finish around ~320 hours. For us to experiment more freely, mul…
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## Context
The `sct_label_vertebrae` function currently works by using a C2-C3 disc detector, then using a template-matching, similarity measure-based approach to identify discs. In other words, it…
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Following up on https://github.com/ivadomed/canproco/pull/95#issuecomment-2142735201, the purpose of this issue is to compare the performance of the contrast-agnostic model v2.3 vs. v2.4 on PSIR data.…
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Hi, I'm running the first tutorial. But I encounter the issue below,
> (ivadomed_env) root@7kmbka3tn7gbj-0:/218019046/ivadomed# ivadomed --train -c /218019046/ivadomed/ivadomed/config/config.json -…
zwb0 updated
9 months ago
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## Description
Adapted spinal canal occupation ratio (aSCOR) is commonly computed as a metric to characterize spinal cord compressions. It is defined as the ratio of the spinal cord area divided by…
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The idea is to train a model that runs on axial MRI slices, and that detects if a slice has a compression.
Data: `dcm-zurich` (internal)
Biblio:
- https://pubmed.ncbi.nlm.nih.gov/34006910/…