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Hi @kevinyamauchi , hi @jo-mueller,
I hope you're doing well. As a follow up to our hackathon, I would like to start a discussion on standardizing an API for surface measurements. So far, `morphome…
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### Annotation Modes:
- [x] points
- [x] paths
- [x] spheres
- [x] dipoles
- [ ] surfaces
### Pose Generation:
- [x] points #12
- [ ] paths
- [ ] backbone
- [ ] rings
- […
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Missing `First chamber radius` gene in genotype. Initial radius influences morphometrics therefore it should be included in algorithm.
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Currently, the CSV files in this repository come from a single [spine-generic/data-multi-subject](https://github.com/spine-generic/data-multi-subject) dataset.
It would be great to extend the datab…
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Is it possible to use the values derived from AxonDeepSeg? [ID4_axon_morphometrics.xlsx](https://github.com/petrabartmeyer/ShapeAdjustedEllipse/files/6933125/ID4_axon_morphometrics.xlsx)
I'm not enti…
Paasu updated
3 years ago
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Pymeshlab fails to run on m1 macs, as builds are only being tested on x86_64. We should evaluate workarounds but I don't have an m1 mac so I can't do much testing...
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There are some super nice graphics libraries that would be very useful (e.g., [libigl](https://libigl.github.io/)). Since they are licensed GPL, we would have to change the license of morphometrics to…
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**Describe the bug**
Morphometrics computations fail when inputting some images, as discussed in #551. Even after converting the image to 8-bit grayscale, an alpha channel was still present (probably…
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This issue is to discuss expanding the measurement API to include surface measurements and neighborhood aggregation functions. Surface measurements are performed on either vertices or faces of a mesh.…
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In order to support 3-class segmentation (context: unmyelinated fibers), we will need to change some stuff on the ADS side. For ivadomed, nothing really changes: we will use 3 ground-truths in the BID…