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This is great - I've included the example that was generated from the workflow I've been working on.
```
graph TD
dwi2response
dwi2fod
mtnormalise
tckgen
tcksift2
dwi2response --> …
kaitj updated
1 month ago
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Hello @arokem
I follow your suggestions to read the tutorial below to calculate the tract profile for custom bundles.
https://github.com/dipy/dipy/blob/master/doc/examples/afq_tract_profiles.py
…
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Is this App checking the gradient orientation wrt the MRtrix convention, right? If so, it should be said, because the orientation can be correct wrt the FSL convention.
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No b0 found during Normalize_DWI process.
MRtrix dwinormalise fail :
```
Command: dwiextract 100610__dwi_cropped.nii.gz -fslgrad 100610_dwi.bvec 100610_dwi.bval -bzero - | mrmath - mean - -axis …
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As explain [here](https://populse.github.io/mri_conv/Documentation/documentation.html), mri_conv allows to obtain bvec and bval in one file in MRTRIX format (if the option is check, a bvecs/bvals text…
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**Description**
It would be good to:
1. Clearly identify the output format that brkraw is using for bvec and bval. For now, it seems to be the FSL format, based for instance on this page: https://mr…
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The number of threads is configurable through a text file - https://mrtrix.readthedocs.io/en/latest/getting_started/config.html
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Question for @arokem: just to be sure, what are the coordinates DIPY expects?
- scanner (like MRTrix)
- voxel (FSL bvec/bval)
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Hiya,
Thanks for this great tool.
Installation no longer works because this version is not compatible with newer versions of eigen. Errors are reported along the lines of:
```
failed with o…
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## Description
I generated tissue maps from some pre-computed Q-ball peaks:
```
from dipy.segment.tissue import TissueClassifierHMRF
hmrf = TissueClassifierHMRF()
apm = anisotropic_power(qball_…