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This was originally in pull request #74 started in June 2017. This pull request is now wildly out of date and needs to be closed. However, the idea and comments are still relevant, perhaps more releva…
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1. How to select an ideal forecasting method? (~ Ward et al. 2014)
* evaluate forecasting approaches across different time series
* do time series properties influence which methods (or para…
ha0ye updated
5 years ago
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Dear Mike,
I am wondering How LD clumping was performed to select eQTLs for candidate gene in eQTL-based two-sample Mendelian Randomization? How to handle pleiotropy eQTL issue? for example, a SNP …
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Filing an actual issue now that I've gotten to work on things that have been talked about here and there and some discretionary/opportunistic bits along the way.
This one starts with the console dr…
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1. The optimization pass was written during the IR refactor of #4336, and uses an ad-hoc algorithm. A much more systematic (data-flow based, but not a fully data-flow analysis) algorithm was later imp…
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An interesting error comes out. I have set mtag to use 'Z', I don't know why it still trying to look for 'P'
`mtag.py --sumstats bip.sumstats.txt,scz.sumstats.txt --snp_name SNP --z_name Z --n_nam…
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Hello,
I'm trying to run MTAG with beta and SE, using the instructions from here:
**Note: If both the effect sizes and the standard errors are present in the input GWAS summary statistics, z is…
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Hi, I am trying to run an analysis using Limix, but am having difficulties with a few different functions.
Firstly, when I run the VarDec variance decomposition example: (https://limix-tempdoc.read…
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Hi
When running MTAG between two traits, I complete munging the first GWAS, but after that I get the A10 error below. It does not depend on the order of traits entered. What could I do here?
Thank…
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Summary of MTAG results:
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Trait # SNPs used N (max) N (mean) GWAS mean chi^2 MTAG mean chi^2 GWAS equiv. (max) N
1 ...peline/QC/trait1.txt 5820480 …