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I was wondering if Molly had alternative boundary conditions to periodic such as reflecting boundary conditions?
How are pairwise interactions calculated if there are no Ewald sums implemented? Are…
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Hi,
Thank you for excellent stat package. I would like to know how to perform a pairwise comparison for group interactions using Tukey HSD. I tried to use pairwise_tukey from pingouin, but it does …
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Right now the interaction in the library are passed down individually as keyword arguments `pairwise_inters`, `specific_inters_list` and `general_inters`. I have a suggenstion that maybe these can be …
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Currently to define `force`/`forces` and `potential_energy` for in-built and custom interactions we have:
- `force(inter::MyPairwiseInter, vec_ij, coord_i, coord_j, atom_i, atom_j, boundary, special=…
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https://doi.org/10.1101/235655 (https://www.biorxiv.org/content/early/2017/12/18/235655)
> The functions of proteins and RNAs are determined by a myriad of interactions between their constituent re…
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When the latent dimension is 0, `libFM` still performs training but the pywFM can't save the model.
Code:
fm = pywFM.FM(task='classification', num_iter=5, k2=0, rlog=False)
Error:
…
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Always funny how these projects start, one goes from like 100 users that understand the tremendous opportunity of fast in-memory computing --- and then 2-3 years later 10 million people heavily rely o…
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I summarize the current design and come out with a few things that can be done to make spark-ffm better.
1. add global bias intercept and one-way interactions, current design only support pairwis…
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**Is your feature request related to a problem? Please describe.**
There are times when one might only want to iterate pairwise over pairs within a region. This is particularly the case for some impl…
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Thank you for this great tool, it's something that has been on my wishlist for a long time.
Running the pairwise interaction script with just the `--help` argument throws a missing file exception:
…