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Dorothee forwarded a message from the PHENIX bug list:
From: Wankowicz, Stephanie
Date: Mon, Jan 4, 2021 at 11:55 AM
Subject: Phenix.reduce Adding spurious hydrogens
To: bugs@phenix-online.org
Hel…
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*Issue migrated from trac ticket # 18096*
**component:** wxGTK | **priority:** normal | **keywords:** CaptureMouse wxAuiNotebook wxProgressDialog yield
#### 2018-03-01 19:24:10: tiberiu.chibici crea…
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Hello,
I'm using PHEnix for an organism where the reference genome has plasmids.
I want to leave the plasmids in for the mapping and snp calling so that plasmid reads don't map to the chromosome…
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Hi,
I am trying to install cryofit to phenix on Mac OS 10.15 Catalina. The installation failed when I use "libtbx.configure cryo_fit". In terminal, the error message is pasted as follows,
Traceback …
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I tried command line installation for Phenix first so that I can choose a destination directory of my preference. Unfortunately my OS (Ventura 13) causes so many security issues and I get so many lib…
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When running the installaion command (either `scipion3 installp -p /path/to/scipion-em-phenix --devel` or `scipion3 installp -p scipion-em-phenix`), I get this output.
```
Scipion v3.0.12 - Eugenius…
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I managed to run a vcf through exomiser-web using phenix. But there are strange results (phenotype score):
First variant: Phenotype score 1.0 and PhenIX semantic similarity score: 1.84 (p-value: 0.…
visze updated
7 years ago
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Data set: http://www.osirix-viewer.com/datasets/DATA/PHENIX.zip
When using a Slicer linked against CTK e489a5fbdbe2be395baf5ac3a7e41fbab2371a3e, I tried to import the Osirix pheonix dataset into Slic…
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Following my new favourite VTune profiler I discovered python2.7 launched every time I open scipion. Turns out that python comes from a phenix plugin, since defineVariables includes a call to getPheni…
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Event:
{"timestamp":"2018-05-30T18:08:09.464+05:30","level":"ERROR","hostName":"JHMELC-VM13-4","process":"dotnet","threadName":"1","loggerName":"dotnetcore_stacktrace.RaiseException","message":"Cust…