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Brew package installation.
Sample code as per instructions.
Stack trace:
#0 /Users/...: str_split('hi Shobi how ar...', -55)
#1 /Users/..../src/Ingest.php(55): Psonic\Ingest->splitString('mes…
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Hello,
I was wondering if it makes sense to use pSONIc for inferring single-copy orthologs from non-contiguous genome assemblies or if you have tried this in the past.
I have a dataset with an …
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Hey Justin,
Beyond the output of MCScanX and possible multiple sequence alignments of the orthogroups, do you have any suggestions for visualising the main output i.e. the refined syntenic collinea…
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Hi Justin,
Thanks for your explanation on using the GFF file.
However, for the MCScanX step, I got this error, supposedly while populating a dictionary (pardon my expertise in Python):
`Trace…
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Hi,
I've a GFF file generated from annotation pipelines which look like this:
`6 NAM mRNA 21136050 21137070 . - . ID=transcript:Osazucena_06g0019330.…
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Hello, I'm interested in using pSONIC on my data. I'm currently editing my gff3 files to match the "Sp## GeneID Start_POS End_POS" format.
For example, in one of the gff3s, I have 7 lines with the…
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Hi, nice project! Any idea on why it does not work inside a Jupyter Notebook?
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```php
$ingest = new Psonic\Ingest(new Psonic\Client('localhost', 1491, 30));
$control = new Psonic\Control(new Psonic\Client('localhost', 1491, 30));
$ingest->connect('SecretPassword1');
$contro…
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I moved to new version of PHP (v.7.4) and the library is failing with the changes of the new api. In particular in line `psonic/src/Commands/Command.php#20`. This is due to the recent change in the `i…
ghost updated
4 years ago
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Guessing I ingest the object key in this way (I am currently using the php-client [Psonic](https://github.com/ppshobi/psonic))
`$ingest->push($collection, $bucket, $object_key, "Search Index");`
I…
ghost updated
5 years ago