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Dear Author:
I am doing single-cell scale eQTL analysis. I wonder if it is okay to use the corrected count matrix by decontx() to be the phenotype of eQTL? Or I should use the count matrix before c…
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Hello,
I'm analysing single-cell full-length RNA sequencing data. I would like to perform an analysis on alternative splicing exons, which has been mentioned multiple times in your research group's…
weib3 updated
2 weeks ago
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Hi,
Thanks so much for this helpful tool! When I analyze my single nuclei dataset, I'm able to run pseudobulk and mixed model analyses through Libra but when I attempt to run a single cell analysis…
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Hello,I'm trying to create the chicken's cistarget database for my single-cell research analysis, and already creating the GRCg6a.regions_vs_motifs.rankings.feather throught EPD's bed and v10_clust mo…
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We have multiple gene signatures for both cell types (e.g. CD3+ = T cell) or for pathway activation (e.g. KI67+ = proliferating). Some of these are canonical, others we find from papers or from doing …
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Hi Tinyi,
Firstly, I would like to express my appreciation for developing BayesPrism, a user-friendly software that has significantly aided my research. However, I have encountered some issues duri…
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Hi yang,
Here are two quick question: 1) if we want to merge multiple sample of AS single cell data, what strategy do you recommend to use to remove batch effect? 2) the RNA velocity analysis …
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- [x] Learn the basics
- [x] Write simple hello
- [x] Write a pipeline code using transformer.
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Hi!
I tried running drug2cell on my single cell data and it works fine, but in the resulting adata-object only around 3000 cells are kept, even though around 30 000 cells go into the analysis from th…