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There is a minor but potentially confusing typo in the multispecies occupancy model case study here: https://github.com/stan-dev/example-models/blob/master/knitr/dorazio-royle-occupancy/dorazio-et-al-…
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I played with a couple of functions to simulate a species occupancy landscape.
From random fields (used in the AHMbook package), we can get something like this:
 on the…
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I asked a related question before, but after reading chapter 4, Encounter rate, I am confused.
In chapter 4 it says, "The ecological metric we’re ultimately interested in is the probability that a …
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so at the mo, this step takes the predicted map of occupancy probabilities and splitting into two 3 discrete regions - core, marginal and absent - based off the data in 1990:1995. I explain how this c…
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@JackHHatfield91 spotted this.
The `rescale_species` function has a min and max argument to stop extreme values exerting undue influence on the geometric mean. We always assumed this would address …
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https://github.com/kaitlyngaynor/gorongosa-mesocarnivores/blob/28f3e622bf27cb972a889a9e6cc460e08629cd24/scripts/species-interaction-model/02-multi-species-occupancy-analysis-GNP.Rmd#L66
actually ru…
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[Humans and other commonly used model organisms are resistant to cycloheximide-mediated biases in ribosome profiling experiments, Sharma et al 2021](https://doi.org/10.1038/s41467-021-25411-y), has da…
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Now that we have this [dashboard](https://iasspeciesdashboard.shinyapps.io/Riparias-baseline-maps/) for exploring the baseline distribution of the RIPARIAS target species, the idea is to extend this d…
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In formulas for GAM on occupancy ((lines [118-119](https://github.com/ToonVanDaele/trias-test/blob/master/R/5c_method_GAM_short.R#L118-L119) in `5c_method_GAM_short.R`)) I see you use `s(ncobs)` inste…