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Currently Graph seems to be just a way to hold some data and there aren't really any APIs that allows the user to just use it without having to implement the logic themselves.
There should be ways …
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A major change to Sesame explained in the comments below has occurred making [graphs contain contexts](http://rdf4j.org/sesame/2.8/apidocs/org/openrdf/model/Graph.html). A note to this effect was remo…
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Encountered an error when feeding in some motifs that had isolated nodes.
Code:
```python
import networkx as nx
from grandiso import find_motifs
host = nx.fast_gnp_random_graph(3, 0.5, dire…
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In [ask-sagemath.org (question 133)](http://ask.sagemath.org/question/133/subsets-with-condition) one asked the following question. Given a collection of sets how do I find a subcollection with pres…
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Hi,
Thanks for your share.Have you ever try experiment on directed graph,I found that this worked good on undirected graph but have some porblem with directed graph.
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Great work, very happy to see this!
I don't know the extent that Grapes relies on Smatch, but it seems pretty significant. So to ensure safety of results, smatch should be replaced by [smatchpp](ht…
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There should be a {1,2} assembly (A2B2 stoichiometry, C2 symmetry) in 1a2k. As of 3.0.3, there's only {} and {1}.
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It appears that Homotopy Type Theory generalises the notion of equality: https://en.wikipedia.org/wiki/Homotopy_type_theory#Equality
This may be important as we have encountered an issue where we c…
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Having a function to calculate the RMSD between small molecules whose atoms are not necessarily listed in the same order seems like it would be potentially very useful, although it would need some gra…