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### Prerequisites
- [x] make sure you're are using the latest version by `taxonkit version`
- [x] read the [usage](http://bioinf.shenwei.me/taxonkit/usage/)
### Describe your issue
* [x] des…
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When using a profile with multiple ranks as input, the output gives summed up ranks for the higher ranks, e.g.:
```
2 1
1224 0.7
1236 0.3
```
Leads to:
```
@SampleID:
@Version:0.10.0
@R…
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Hi,
I know that emapper2gbk retrieves taxonomic information about the organism from https://www.ebi.ac.uk/ena/taxonomy/rest/scientific-name/ online. However, the scientific names would change over t…
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Hello Thank you for your nice work.
I downloaded GTDB taxa to utilize it for kraken database. (the taxonomy files you've created)
I utilized GTDBr214.1 taxdump files.
I just found out one spec…
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Hi,
I've followed the methods section in this paper:
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1299-7
To generate `diamond blastx` hits from short-read WGS data, and …
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# Mindmap
生信学习 编程基础 R语言学习 Python学习 Linux学习 Slurm集群使用基础 Julia初尝试 Quarto初尝试 R语言精进 R-统计分析 R绘制优美的地图 R绘制优美的进化树(基础) R绘制优美的进化树(进阶) R绘制柱形图及其变换(bar chart) R进阶使用小技巧 R快速翻译和绘图中文支持 R调用Taxonkit展示系统发育信息 R语言爬虫(rvest…
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Hello, it's me again.
I wondered if the Microeukaryotic DB can be used with the MMSEQS2 taxonomy module. I am interested in using this database to assign taxonomy at the contig level rather than t…
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first issue! :D
thanks for [providing the script as per #71 in kraken2](https://github.com/DerrickWood/kraken2/issues/71) - I've tried using this but can't seem to get it to roll out.
For ```Kr…
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In order to make the NCBI taxonomy more comparable with another one that simply consists of the ranks: domain, phylum, clade, order, family, genus, species; I would like to contract the taxonomy to th…
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Hello everyone,
I'm trying to follow the pipeline to eliminate the foreign genomes in the de novo assembled genome. I have a questions regarded to search against the database by DIAMOND. I got the r…