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Dear developers:
First of all, thank you for developing this great algorithms, it really helped my research.
I try to find the specific immune cell fraction in a bulk dataset containing multiple c…
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Right now the migration (slurp) tables dont add provenance to definitions, they should!
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Hello!
I am running numbat on 36 lung tumor cryo visium reactions. My normal reference is a at tumor-adjacent "normal" visium reaction that has been confirmed to be tumor-free by a pathologist. My…
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@pascaleproulx
I have a working GoLLM task for AMR enrichment. We need to integrate it with the rest of the task runner architecture @kbirk. Example outputs below.
BIOMD0000000024
```
{…
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Hi Tinyi,
Firstly, I would like to express my appreciation for developing BayesPrism, a user-friendly software that has significantly aided my research. However, I have encountered some issues duri…
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Hello,
Thank you for the amazing tool. It works really good. I have 2 particular questions.
I have 2 big datasets, primary lung adenocarcinoma tumor and brain metastasis of lung adenocarcinoma.
Th…
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I am testing SCEVAN for stratifying malignant cells in CD45 sorted dataset, i.e., up to a certain limit, I am confident about the cells' status (malignant versus normals). On that note, I noticed that…
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Hello,
I am seeking clarification on how the labels for patches are assigned in the project. I apologize if I have overlooked any relevant information regarding this.
Is it correct to assume tha…
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Does it make sense to run copykat on tumor samples containing very low number of normal epithelial cells or vice versa?
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### Description
in the following table definition, the comma of 3 lines:
is_ffpe text NULL -- is_ffpe; Indicator to signify whether or not the tissue sample was fixed in formalin and embedded i…