-
I have discovered outdated requirements in cubi-tk, which are causing unresolvable conflicts when including cubi-tk as a dependency in other Python projects.
Offending requirements:
- `jsonschem…
-
Currently an endpoint for retrieving annotations for an individual case is already exposed in the following endpoint:
https://github.com/bihealth/varfish-server/blob/1e956c92aabfc7fee9caaefaec60f00…
-
**Describe the bug**
There is an endpoint for quering for variants on specific position range.
E.x.
```
https://reev.cubi.bihealth.org/internal/proxy/annonars/annos/range?genome_release=&chr…
-
**Is your feature request related to a problem? Please describe.**
We currently use the Genomics England PanelApp API for fetching gene panels. Such proxying comes at a price in terms of uptime r…
-
**Describe the bug**
Brackets are gone for any protein position. As these are predictions they need to be there according to HGVS nomenclature
**To Reproduce**
Steps to reproduce the behavior:
1…
-
In GitLab by @holtgrewe on Aug 5, 2019, 18:21
- separate
- API for connecting master and mirror sites (system level access)
- API for users (user level access with user roles)
- use cases
…
-
**Is your feature request related to a problem? Please describe.**
Some variant calls might be incorrect or need to be adjusted to take multinucleotide variants into account. Currently the user might…
-
We need to export Variant Information including Interpretation from Varfish into a database for bookkeeping and at some point for creation of reports.
This process is also currently used to create …
-
**Is your feature request related to a problem? Please describe.**
anyhow:error as a "catch-all" error type is not ideal as it means throwing away the benefit gained from rusts native error handl…
-
**Is your feature request related to a problem? Please describe.**
Currently we have already improved the VarFish release process by having fixed maintenance windows on the Berlin instance. Still the…