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Hi author,
Right now I download the pretrain weight from [Multiview Contrast](https://zenodo.org/record/7593637/files/mc_gearnet_edge.pth). I want to load this weight, and then pass a pdb file to the…
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How can we use protein sequence as receptor input and ligand smiles file as a ligand input?
I tried to use fasta format or txt format for the sequence of my protein but I got an error as " can only j…
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Hi Dr. Vdemichev,
I was able to analyze the DIA-NN output using your R package. However, it only contains the Uniprot ID and correspondence value for each sample. I also want corresponding Protein Na…
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Is there a way to force phyling/easel to know the input sequences are a particular alphabet type?
This protein set:
```
more ../input/Allomyces_macrogynus_ATCC_38327.proteins.fa
>F5BE82F7_000001…
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Hi, I have a corpus of about 500,000 protein sequences and would like to apply them to existing models like this one for predicting the evolution of monoclonal antibody binding to an epitope.
How cou…
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Dear
Hello, I want to use my own dataset to train a model, but I'm not sure how to preprocess the input data. The function I have is:
python
def surfdata_prepare(ply_file, frag_kept_sdf):
'''
…
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Hello!
Thanks for making the tutorials available!
I'm trying to make a pipeline in python that will make use of MGL Tools as part of the process.
I'm trying to:
(A) Model mutations in a protein…
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# Protein Inception | Liam's Blog
Protein design by hallucination. DeepDream, Markov Chain Monte Carlo (MCMC), KL divergence, gradient optimization, scaffolding functional sites, SARS-CoV-2 receptor …
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`targets/?title=CHIKV_Mac` returns `null` in the `template_protein` on production meaning the ribbon is missing.
@kaliif please investigate