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See https://github.com/PHI-base/curation/issues/104
eg WT pathogen protein with normal protein localization can be captured by GO CC without needing phenotype annotation.
altered pathogen protei…
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Hi there,
I have got an error at stage 5 indicating that the header of fasta files are not correct:
processing file GCF_014441545.1_ROS_Cfam_1.0_protein.fasta
The ID on def line '>GCF_014441545.1_R…
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It would be very useful to have annotations for KEGG subsystems and genes assigned by the ModelPolisher. This would save a lot of time and work during model curation.
To obtain genes' annotations o…
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Reviewing the annotation intersection violations alerted us to:
https://amigo.geneontology.org/amigo/reference/PMID:12485443
This paper describes plasma membrane lipid profiling, and as such isn't…
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I am trying to run the following federated query on a virtuoso 7.1 instance:
SELECT ?pwIdentifier ?disease ?pwTitle WHERE {
SERVICE http://beta.sparql.uniprot.org/{
?protein up:annotation ?annota…
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Hi there,
I've been finding it quite hard to understand how to use the tool with a custom .fasta file. in my case I completely removed all the sequences from the sample_files and added my own (for…
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SIB curators are moving from free text annotation describing the effects of variation on protein structure and function, e.g. "reduces protein stability", "interferes with zinc binding". They have fig…
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Hi @nadavbra,
Cool model, I just have a few questions. The first being, did you ever recover the GO annotation vector that was lost in https://github.com/nadavbra/protein_bert/issues/6? I can't se…
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Add protein domains (from VEP annotations) to variant tables.
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From @dexink
I was just about to ask about whether there was already a ticket! ha
...Because the more I check into Aro1, the more I don't like it.
The length, weight, etc., were originally publis…