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Nothing happens when I'm trying to change argument 'digits' in heatmap_fst(), it is always 5 decimal digits on heatmap. For instance:
heatmap_fst(fst.ci$pairwise.fst.full.matrix, fst.ci$pairwise.fs…
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Hi Thierry
I think the issue I am having is similar to [https://github.com/thierrygosselin/radiator/issues/11](url)
I am trying to tidy my Stacks haplotype VCF file and it is resulting in warnin…
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Hello Thierry and Floriaan,
Thanks for an amazing package first of all.
I encountered this issue when using a GDS file with only 1 population with >10 individuals (the wonders of critically enda…
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I cannot help you if I cannot reproduce the problem.
Consequently, when reporting an issue, make sure to include:
**Describe the bug**
Can you provide clarity on loading output from the genomic_c…
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Hi Thierry,
I've come back to `radiator` to process some DArT data and I'm glad to see how it matured in the last couple of years.
I did came across a potential bug when filtering the data (both…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Bioconductor/VariantExperiment
Confirm the follow…
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getGenotype and getGenotypeAlleles will fail for haploid calls since "phase" node will not exist. See https://github.com/zhengxwen/SeqArray/issues/52
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Hi,
I'm trying to generate some basic stats for my STACKS generated haplotype data (nucleotide diversity per individual, number polymorphic/monomorphic loci per sampling site). I have a populations…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/zhengxwen/SAIGEgds
Confirm the following by editi…
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I am new to using SNPRelate to analyze my data --- I pruned my SNPS for LD and want to filter my original VCF files according to the pruned data set from SNPRelate (for further use in other programs).…