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Are there any suggestions / best practices about how to extend force layout?
I tried to add a new gravity like force, it works, but the nodes are oscillating around each other which is really annoyin…
ghost updated
9 years ago
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I am attempting to adapt the code provided by @jchodera for his wca-dimer example in the NCMC paper (PNAS 2011) to use a newer version of the [GHMC integrator](https://github.com/choderalab/openmm-tes…
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I'd like to open a discussion on how to implement new barostat features. CHARMM currently ships with a plugin to implement some features that aren't currently supported by MonteCarloAnisotropicBarost…
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I am opening a new issue to start a discussion of how we can have OpenMM support constant-pH simulation, which would allow protonation states of molecules in the system (both proteins and small molecu…
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Hi,
I have been studying d3's force layout recently and I got a question.
```
// gauss-seidel relaxation for links
for (i = 0; i < m; ++i) {
o = links[i];
s = o.source;
t =…
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The current integrator is a Euler integration, which very quickly becomes inaccurate and is frowned upon. Implement either runge kutta or verlet or both and give the user the option to decide
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Hi there!
This is my first Rajawali live wallpaper.
Kinda rushed to publish it on Google, without too much QA. So use it at your own risk, cause bugs and lags are possible ;)
https://play.google.com/…
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I don't think you need to include the title of the Wikipedia page (since it's just "Verlet integration), so I just wanted to give the link. I added a period after the link, hoping it would appear out…