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The tutorial and docs should explain how to deal with different types of GAMS errors, like missing/invalid license or execution errors (infeasibility).
The debugging features also need to be explai…
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I am mapping paired end reads to HPRC-GrCH38 (indexed with vg autoindex)
`vg autoindex --workflow giraffe -x grch38.xg -g grch38.gcsa -g /path/to/file/grch38/hprc-v1.0-minigraph-grch38.gfa -p GRCH…
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I read in your paper:
"GAM-NGS uses only reads aligning to a single position (a.k.a. uniquely aligned), discarding all reads that have two or more high scoring alignments (a.k. a. ambiguously aligned)…
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Hi, the aim accuracy pack worked great for 1 player but now two player is non functional.
I mapped the controls in dolphin for player 1 and 2 and scripted the profiles in the per gam editor, but o…
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It seems that function plot_gam does not extract correctly the data of the gam plot when the predictor name appears more than one time in the model
See for example https://stackoverflow.com/questio…
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Dear Mr.,
I get a segmentation fault (bug) in the merging phase of GAM-NGS (2 de novo assembly datasets,50bp PE Illumina library. Should I rather use CentOS or Fedora, or do you think there is a bug i…
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Now that [vg supports indexed GAF files](https://github.com/vgteam/vg/pull/4248), we should be able to support GAF alongside GAM as a file type for read tracks.
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## Summary
When attempting to construct an instance of an interface to a GAMS solver with optional keyword arguments (such as 'executable' and 'options') passed, the keyword arguments appear to be…
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With tests, I have this error, related to this line:
https://github.com/dsarrut/gam/blob/master/gam/Simulation.py#L220
```python
sim.initialize()
File "/Users/tbaudier/Software/GatePython/gam/…