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https://github.com/ZJYgrp/enzyme_workflow/issues/11#issuecomment-789395319
https://github.com/ZJYgrp/enzyme_workflow/issues/10#issuecomment-782613999
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## Dataset for ML epitope analysis
### Exclude criteria:
1. Remove 20% 'N"
2. no start codon, indel cause coding frameshift
3.remove artificial strains
## epitope identify pipeline
1.Class…
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I am recently running snpgenie within pool analysis, using command `snpgenie.pl --minfreq=0.01 --snpreport=${sample}_snpgenie.vcf --vcfformat=2 --slidingwindow=30 --fastafile=./seqs/MN908947_3.fasta -…
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The mutant changes variables in modulo calculations. E.G.
``` ruby
final_sum.modulo(10).zero?
```
will be changed into
``` ruby
final_sum.modulo(-10).zero?
```
I think on modulo it make no sense…
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**TODO**
- [x] Generate table with the following columns {sample name, # variants in primary xls, # of variants in calls xls, # variants imputed, total number of variants in sample}
- [x] Generate…
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# Description
aten::append is inplace. This creates issues for downstream torchscript users that do not have the inplace semantics, such as ONNX.
For example, when used inside a loop, the output of…
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First things first: mutant is amazing, thanks for making it!
The output is pretty well formed for terminal usage. The output is also pretty daunting if you don't know what you're looking at. A nice…
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Hi, i used the docker version of meskit and shiny-server. I can successfully open the browser, but when i follow the example data analysis, I can not draw the mutation profile. error message "An …
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Current design of Vertigo will attempt to generate all possible mutants in the defined mutation space, only then report will be generated. However, it is likely that there is no enough budget to perfo…
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Hello, I have 11 samples from 1 patient so I am trying to run an nd analysis. I ran this successfully on 3 samples but when I increase, when "Estimating density for all MCMC iterations..." the vector …