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I am using XiView to visualize a set of crosslinking experiments but am unable to visualize the 2D network(XiNet view). I’ve attached an example of the data I am uploading; [WT_NDC80_DSSO_MQ_xiView…
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Hello,
I have run FastOMA on about 2200 genomes. The inference of HOGs finished all right (with some tweaks in the resource config), however the `fastoma_report` step failed as it consumes a very l…
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In some of our experiments we have different number of channels for some of the cycles. This results in mismatched numbering in the order of the channels, for example:
cycle 1 has DAPI only -> DAPI …
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**Describe the bug**
loading MD lammps cg spica trajectory gives error and does not load.
**To Reproduce**
Topology: 4ypg-e.psf
Trajectory: 4ypg-20fs.lammpsdump
"Load"
**Expected behavior**
…
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Hello,
I have done docking between a ligand and a receptor using AutoDock vina. In the final output (_out.pdbqt), I realized there is an atom G (which does not exist in the original ligand file. In t…
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I'm having trouble running make on my Mac machine, and after squashing a lot of small issues, I started reading on the va_args behaviour/specification in the standard, and while googling found this in…
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Thanks for submitting an issue!
Here's a quick checklist in what to include:
1. I created a conda env
2. activated conda env
3. using conda installed pyemma, mdshare, nglview, jupyter notebook.
…
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Hi, I reproduced the demo, but I have one question about obtaining latent representations:
Why did you input `masks_ADT` to `update_z()`?
```
# only utilize proteins
masks_ADT = masks.numpy().copy…
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sonification of DNA
http://blogs.nature.com/naturejobs/2017/07/17/the-sound-of-dna/
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Tables within an article.
## User Stories
### Author
1. A an author, I want to be able to see the title and legend for a table so that I can check the content is correct.
2. As an author, I want to b…