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### `brew gist-logs ` link OR `brew config` AND `brew doctor` output
```shell
HOMEBREW_VERSION: 3.5.10-49-gb2ddb34
ORIGIN: https://github.com/Homebrew/brew
HEAD: b2ddb341a0489834dbbfcb57544d87c4…
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Hi,
I'm currently using orthofinder on 200 very-closely related genomes (strains of the same yeast species). I've repeatedly observed an error which occurs at the tree building step. Any advice in …
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# Running Orthologue Prediction
## 1. Checking required programs are installed
Test can run "fastme -i myfilepath/SimpleTest.phy -o myfilepath/SimpleTest.tre" - ok
Test can run "dlcpar_search --versi…
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If, for whatever reason, fastme creates an empty tree file then OrthoFinder crashes when it tries open the file (as the newick tree reader throws an exception):
> Best outgroup(s) for species tree
…
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After posting I realized you're at ver. 1.1.4 so I'm getting it updated on our cluster and I'll see if that solves the problem. If not, I'll update again.
Hi David,
I think is may be a problem …
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Migrated from [rt.perl.org#24821](https://rt-archive.perl.org/perl5/Ticket/Display.html?id=24821) (status was 'resolved')
Searchable as RT24821$
p5pRT updated
19 years ago
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Migrated from [rt.perl.org#21261](https://rt-archive.perl.org/perl5/Ticket/Display.html?id=21261) (status was 'resolved')
Searchable as RT21261$
p5pRT updated
21 years ago