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https://mp.weixin.qq.com/s/tyWsPp6EahMjor2a-5aeDQ
ixxmu updated
2 years ago
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### Abstract
This workshop will provide a beginner’s guide to matrix factorization, principal component analysis (PCA), the difference between singular value decomposition, different forms of PCA and…
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### Description
As a user, I want to see harmonized data in the PDX Finder.
### Acceptance criteria
- [x] mappings for DFCI are done
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### Description
As a developer, I want to ensure correct metadata is represented in the PDX FInder.
### Acceptance criteria
- [x] metadata is cross-checked with provider
- [x] metadata updated
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Codes are here
https://github.com/liulab-dfci/MAESTRO/blob/2c87d7a624745cc7e4fefc202042b221844e722c/R/RNARunSeurat.R#L69-L70
If we want to call the value 'percent', please multiply the value wit…
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### Description
Load additional 40+ models to DFCI data.
### Acceptance criteria
- [x] metadata template validated
- [x] data validated and harmonized
- [x] data loaded
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https://mp.weixin.qq.com/s/6Yu3WkkyZb1_-lZl-J_ZTA
ixxmu updated
2 years ago
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Hello
I am trying to map the clonotype information (assemble#) to the corresponding cell.
How can I do it?
(I am using 10x data)
Thank you
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Hi,
I experienced an error while installing the MAESTRO version 1.5.0. Specifically, when I ran `mamba create -n MAESTRO maestro=1.5.0 -c liulab-dfci`, it gave me the following error message:
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Hi, sorry to bother you again.
We followed the command lines to install the MAESTRO with miniconda:
'''
$ wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
$ bash Mini…