-
when i ran gxe analysis using old version of gemma, i got similar p values comparing p_walt, p_lrt and p_score. Now I use the same data,same code, replicate the analysis vis gemma 0.97. I get the exac…
-
As discussed in this [thread](https://groups.google.com/forum/#!topic/gemma-discussion/0oOFlxvaQi4)
Using a plink input file (-file) with an additional phenotype file (-p) works:
```
gemma -bfile…
-
I have installed the program and can run your example data set without problem. Similarly, I can run the program on small subsets of the SNPs with my phenotypic data. However, when I calculate relat…
-
I think there might be a bug in GEMMA. When the probability is less than 10^-308, then 0.000000e+00 is printed instead. I think it might be a floating point error:
https://en.wikipedia.org/wiki/IEEE_…
-
I added my data using the MVP.data function. I've confirmed that the output files all have the same n value, but when I run the following code, I get a Matrix dimensions error. This error does not occ…
vbern updated
5 years ago
-
## Enhancement
@bartlettroscoe
This is the follow on to https://github.com/trilinos/Trilinos/issues/5316 and https://github.com/trilinos/Trilinos/pull/5317, where an Intel 18.0.5 compiler environ…
-
when I use gemma 0.97 to generate relatedness matrix, i got the matrix created and also got the warning as below. May I trust and use the matrix? If no,what does it mean and what should I do. Thank yo…
-
Every time I do `brew upgrade`
```
Error: Calling needs :cxx11 is disabled! There is no replacement.
Please report this to the osgeo/osgeo4mac tap:
/usr/local/Homebrew/Library/Taps/osgeo/homeb…
-
Cases-In-Point:
https://gemma.msl.ubc.ca/expressionExperiment/showExpressionExperiment.html?id=8912
https://gemma.msl.ubc.ca/expressionExperiment/showExpressionExperiment.html?id=9578
https://gemma…
-
Why are you using the Wald test?
```
/usr/local/guix-profiles/gn2-latest/bin/gemma -h 8
GEMMA 0.97 (2018/04/05) by Xiang Zhou and team (C) 2012-2018
LINEAR MIXED MODEL OPTIONS
-lmm [num]…